Infection / VTE · LIVE
VACS Index 2.0 (Tate 2019)
VACS 2.0
Compute the Tate 2019 VACS Index 2.0 score for 5-year all-cause mortality from age, CD4, HIV-1 RNA, hemoglobin, caller-assigned FIB-4 and eGFR, hepatitis C, albumin, WBC, and BMI using Appendix Table 1 coefficients.
Markdown: /docs/vacs-2.md · Canonical: https://magentlab.com/docs/vacs-2
Not a medical device. Not a diagnosis, dose, or listing recommendation.
What it computes
Compute the Tate 2019 VACS Index 2.0 score for 5-year all-cause mortality from age, CD4, HIV-1 RNA, hemoglobin, caller-assigned FIB-4 and eGFR, hepatitis C, albumin, WBC, and BMI using Appendix Table 1 coefficients.
When to use
When an agent already has those ten caller-assigned values and needs the published VACS 2.0 index score. Not VACS Index 1.0. magent does not assay labs, compute FIB-4 or eGFR, assign HIV status, or order ART.
When not to use
- Not a medical device and not a diagnosis. magent does not assign HIV status. Not an antiretroviral, hepatitis C, or transfusion order.
- This is Tate 2019 VACS Index 2.0 only. It is not VACS 1.0 (Tate 2013 categorical points). VACS 2.0 adds albumin, WBC, and BMI and uses continuous polynomials rather than 1.0 point bands.
- FIB-4 and eGFR are caller-assigned. magent does not recompute FIB-4 and does not compute MDRD or CKD-EPI. Race is not an input.
- Appendix Table 1 does not publish a baseline survival S0. The response is the Appendix Table 2 scaled index score (44 at the median profile; 20 × linear-predictor delta). Appendix Table 3 reports HR 1.31 per 5 points in VACS. That is not a patient-specific 5-year percent.
- eGFR uses the published Appendix Table 1 footnote truncated linear terms (knots 35, 65, 115), not an invented restricted cubic spline.
Formula
lp = age_poly + cd4_poly + rna_poly + hb_poly + fib4_poly + egfr_spline + hcv + alb_poly + wbc_poly + bmi_poly; score = round(44 + 20*(lp - lp_median)); lp_median is Appendix Table 2 median profile (age 52, CD4 435, log10 HIV-1 RNA 1.7, Hb 14, FIB-4 1.34, eGFR 90, HCV no, albumin 4, WBC 5.5, BMI 25.3); age censored 30-75, X=(age-50)/5, PE 0.056/-0.004/0.005; CD4 censored 0-1000 as ln(max(1000-CD4, 1)), PE -0.056/-0.153/0.024; HIV-1 RNA log10 copies censored 1.3-5.0, centered (logVL-2), PE 0.513/-0.422/0.098; hemoglobin censored 9-16, centered (hemoglobin-14), PE -0.134/0.026/0.005; FIB-4 censored 0.5-7.5, PE 0.220/-0.009; eGFR censored 0-180, X1=eGFR/10, X2=max(eGFR-35,0)/10, X3=max(eGFR-65,0)/10, X4=max(eGFR-115,0)/10, PE -0.031/-0.077/0.106/0.133; HCV yes 0.342; albumin censored 2-5, centered (albumin-4), PE -0.443/0.104/0.028; WBC 10^9/L censored 2.5-11, centered (WBC-5.5), PE 0.126/0.020/-0.004; BMI censored 15-35, centered (BMI-25), PE -0.055/0.004; Tate 2019 Appendix Table 1 main analysis LVCF 180 days; caller-assigned FIB-4 and eGFR; not VACS 1.0; no published S0
Citation
- Authors
- Tate JP, Sterne JAC, Justice AC; Veterans Aging Cohort Study (VACS) and the Antiretroviral Therapy Cohort Collaboration (ART-CC)
- Source
- AIDS. 2019;33(5):903-912
Worked example
Age 40 with otherwise lower-risk labs
Given:
age=40albumin_g_dl=4.2bmi_kg_m2=26cd4_cells_mm3=600egfr_ml_min_1_73m2=100fib4=1.0hemoglobin_g_dl=15hepatitis_c=falsehiv_rna_copies_ml=50wbc_10e9_l=6.0
- Censor and center as Appendix Table 1: age 40 → X=(40-50)/5=-2; CD4 600 → ln(400); HIV-1 RNA 50 → log10 1.699, centered -0.301; hemoglobin 15 → -1; FIB-4 1.0; eGFR 100; HCV false; albumin 4.2 → 0.2; WBC 6.0 → 0.5; BMI 26 → 1
- Sum the published X/X²/X³ (and eGFR X1-X4) terms to lp
- score = round(44 + 20 × (lp - lp_median)); lp_median is the Appendix Table 2 median profile
Age 65 with the same labs
Given:
age=65albumin_g_dl=4.2bmi_kg_m2=26cd4_cells_mm3=600egfr_ml_min_1_73m2=100fib4=1.0hemoglobin_g_dl=15hepatitis_c=falsehiv_rna_copies_ml=50wbc_10e9_l=6.0
- Same labs as the age-40 example; age 65 → X=(65-50)/5=3
- score = round(44 + 20 × (lp - lp_median))
Also searched as
- VACS Index 2.0
- VACS 2.0
- Veterans Aging Cohort Study Index 2.0
- Tate 2019 VACS
- HIV 5-year mortality index
- VACS Index albumin WBC BMI
Try
Opens the live endpoint. Unpaid browser requests show the paywall; agents should send Accept: application/json.
Full URL: https://api.magentlab.com/api/calc/vacs_2?age=40&cd4_cells_mm3=600&hiv_rna_copies_ml=50&hemoglobin_g_dl=15&fib4=1.0&egfr_ml_min_1_73m2=100&hepatitis_c=false&albumin_g_dl=4.2&wbc_10e9_l=6.0&bmi_kg_m2=26
Call
Expect HTTP 402 until you retry with PAYMENT-SIGNATURE. Incomplete query params
return HTTP 400 before any quote or charge.
curl -i -H "Accept: application/json" "https://api.magentlab.com/api/calc/vacs_2?age=40&cd4_cells_mm3=600&hiv_rna_copies_ml=50&hemoglobin_g_dl=15&fib4=1.0&egfr_ml_min_1_73m2=100&hepatitis_c=false&albumin_g_dl=4.2&wbc_10e9_l=6.0&bmi_kg_m2=26"
Parameters
| Name | Type | Required | Description |
|---|---|---|---|
age |
integer | required | Age in years (integer 18-120). Tate 2019 Appendix Table 1 censors age at 30-75 and uses the cubic polynomial of (age-50)/5. magent does not assign age. |
cd4_cells_mm3 |
integer | required | CD4 count in cells/mm³ (integer 1-2000). Appendix Table 1 censors at 0-1000 and uses ln(max(1000-CD4, 1)). magent does not assay CD4. |
hiv_rna_copies_ml |
number | required | HIV-1 RNA in copies/mL (0-10000000). Appendix Table 1 uses log10 copies censored at 1.3-5.0 and centered at (logVL-2). magent does not assay viral load. |
hemoglobin_g_dl |
number | required | Hemoglobin in g/dL (3-22). Appendix Table 1 censors at 9-16 and centers at (hemoglobin-14). magent does not assay hemoglobin. |
fib4 |
number | required | Caller-assigned FIB-4 (0.1-20). Appendix Table 1 censors at 0.5-7.5. magent does not recompute FIB-4. |
egfr_ml_min_1_73m2 |
number | required | Caller-assigned eGFR in mL/min/1.73m² (0-200). Appendix Table 1 censors at 0-180 and uses the footnote truncated linear terms at 35, 65, and 115. magent does not compute MDRD or CKD-EPI. Race is not an input. |
hepatitis_c |
boolean | required | Caller-assigned hepatitis C co-infection (Tate 2019). true adds 0.342 to the linear predictor. magent does not diagnose hepatitis C. |
albumin_g_dl |
number | required | Serum albumin in g/dL (1-6.5). Appendix Table 1 censors at 2-5 and centers at (albumin-4). magent does not assay albumin. |
wbc_10e9_l |
number | required | White blood count in 10^9/L (0.5-50), equal to k/µL. Appendix Table 1 censors at 2.5-11 and centers at (WBC-5.5). magent does not assay WBC. |
bmi_kg_m2 |
number | required | Body mass index in kg/m² (10-60). Appendix Table 1 censors at 15-35 and centers at (BMI-25). magent does not compute BMI from height and weight. |
Bulk (POST)
POST the same path with a JSON items array. The first item is the GET unit; each additional item is $0.002. Invalid items return HTTP 400 before settlement.
- 1 to 25 items. Each item uses the same keys as the GET query parameters.
- POST of 1 item costs the same as GET. Lists longer than 25: chunk into multiple POSTs. Extra items still execute; do not pad dummy rows.
- The first invalid item fails the whole request (index in the 400 JSON). You are not charged.
- HTTP 200 is {count, path, items}. Each items[i] is the GET 200 body for that row.
- Catalog misses (empty matches, found=false) stay paid 200s inside that slot.
- x402 resource URL is this path plus n and body_sha256. Browsers that prefer text/html get the same paywall as GET; Pay retries POST with the same items.
Example request (fixture)
{
"items": [
{
"age": "40",
"albumin_g_dl": "4.2",
"bmi_kg_m2": "26",
"cd4_cells_mm3": "600",
"egfr_ml_min_1_73m2": "100",
"fib4": "1.0",
"hemoglobin_g_dl": "15",
"hepatitis_c": "false",
"hiv_rna_copies_ml": "50",
"wbc_10e9_l": "6.0"
},
{
"age": "40",
"albumin_g_dl": "4.2",
"bmi_kg_m2": "26",
"cd4_cells_mm3": "600",
"egfr_ml_min_1_73m2": "100",
"fib4": "1.0",
"hemoglobin_g_dl": "15",
"hepatitis_c": "false",
"hiv_rna_copies_ml": "50",
"wbc_10e9_l": "6.0"
}
]
}
Opens a two-item fixture on the API host. Unpaid browsers get the same MetaMask paywall as GET; Pay retries POST with those items.
Example 200 (fixture)
{
"count": 2,
"path": "/api/calc/vacs_2",
"items": [
{
"age": 40,
"disclaimer": "Not a medical device. Deterministic published-formula or published-code output for autonomous agents. A licensed clinician remains responsible for patient care and billing submissions.",
"citation": {
"authors": "Tate JP, Sterne JAC, Justice AC; Veterans Aging Cohort Study (VACS) and the Antiretroviral Therapy Cohort Collaboration (ART-CC)",
"doi": "10.1097/QAD.0000000000002140",
"id": "tate-2019-vacs-2",
"pmid": "30649088",
"source": "AIDS. 2019;33(5):903-912",
"title": "Albumin, white blood cell count, and body mass index improve discrimination of mortality in HIV-positive individuals"
},
"formula": "vacs_2",
"formula_expression": "lp = age_poly + cd4_poly + rna_poly + hb_poly + fib4_poly + egfr_spline + hcv + alb_poly + wbc_poly + bmi_poly; score = round(44 + 20*(lp - lp_median)); lp_median is Appendix Table 2 median profile (age 52, CD4 435, log10 HIV-1 RNA 1.7, Hb 14, FIB-4 1.34, eGFR 90, HCV no, albumin 4, WBC 5.5, BMI 25.3); age censored 30-75, X=(age-50)/5, PE 0.056/-0.004/0.005; CD4 censored 0-1000 as ln(max(1000-CD4, 1)), PE -0.056/-0.153/0.024; HIV-1 RNA log10 copies censored 1.3-5.0, centered (logVL-2), PE 0.513/-0.422/0.098; hemoglobin censored 9-16, centered (hemoglobin-14), PE -0.134/0.026/0.005; FIB-4 censored 0.5-7.5, PE 0.220/-0.009; eGFR censored 0-180, X1=eGFR/10, X2=max(eGFR-35,0)/10, X3=max(eGFR-65,0)/10, X4=max(eGFR-115,0)/10, PE -0.031/-0.077/0.106/0.133; HCV yes 0.342; albumin censored 2-5, centered (albumin-4), PE -0.443/0.104/0.028; WBC 10^9/L censored 2.5-11, centered (WBC-5.5), PE 0.126/0.020/-0.004; BMI censored 15-35, centered (BMI-25), PE -0.055/0.004; Tate 2019 Appendix Table 1 main analysis LVCF 180 days; caller-assigned FIB-4 and eGFR; not VACS 1.0; no published S0",
"score": 30,
"albumin_g_dl": 4.2,
"bmi_kg_m2": 26.0,
"wbc_10e9_l": 6.0,
"hemoglobin_g_dl": 15.0,
"linear_predictor": -1.428513,
"egfr_ml_min_1_73m2": 100.0,
"hepatitis_c": false,
"fib4": 1.0,
"cd4_cells_mm3": 600,
"hiv_rna_copies_ml": 50.0
},
{
"age": 40,
"disclaimer": "Not a medical device. Deterministic published-formula or published-code output for autonomous agents. A licensed clinician remains responsible for patient care and billing submissions.",
"citation": {
"authors": "Tate JP, Sterne JAC, Justice AC; Veterans Aging Cohort Study (VACS) and the Antiretroviral Therapy Cohort Collaboration (ART-CC)",
"doi": "10.1097/QAD.0000000000002140",
"id": "tate-2019-vacs-2",
"pmid": "30649088",
"source": "AIDS. 2019;33(5):903-912",
"title": "Albumin, white blood cell count, and body mass index improve discrimination of mortality in HIV-positive individuals"
},
"formula": "vacs_2",
"formula_expression": "lp = age_poly + cd4_poly + rna_poly + hb_poly + fib4_poly + egfr_spline + hcv + alb_poly + wbc_poly + bmi_poly; score = round(44 + 20*(lp - lp_median)); lp_median is Appendix Table 2 median profile (age 52, CD4 435, log10 HIV-1 RNA 1.7, Hb 14, FIB-4 1.34, eGFR 90, HCV no, albumin 4, WBC 5.5, BMI 25.3); age censored 30-75, X=(age-50)/5, PE 0.056/-0.004/0.005; CD4 censored 0-1000 as ln(max(1000-CD4, 1)), PE -0.056/-0.153/0.024; HIV-1 RNA log10 copies censored 1.3-5.0, centered (logVL-2), PE 0.513/-0.422/0.098; hemoglobin censored 9-16, centered (hemoglobin-14), PE -0.134/0.026/0.005; FIB-4 censored 0.5-7.5, PE 0.220/-0.009; eGFR censored 0-180, X1=eGFR/10, X2=max(eGFR-35,0)/10, X3=max(eGFR-65,0)/10, X4=max(eGFR-115,0)/10, PE -0.031/-0.077/0.106/0.133; HCV yes 0.342; albumin censored 2-5, centered (albumin-4), PE -0.443/0.104/0.028; WBC 10^9/L censored 2.5-11, centered (WBC-5.5), PE 0.126/0.020/-0.004; BMI censored 15-35, centered (BMI-25), PE -0.055/0.004; Tate 2019 Appendix Table 1 main analysis LVCF 180 days; caller-assigned FIB-4 and eGFR; not VACS 1.0; no published S0",
"score": 30,
"albumin_g_dl": 4.2,
"bmi_kg_m2": 26.0,
"wbc_10e9_l": 6.0,
"hemoglobin_g_dl": 15.0,
"linear_predictor": -1.428513,
"egfr_ml_min_1_73m2": 100.0,
"hepatitis_c": false,
"fib4": 1.0,
"cd4_cells_mm3": 600,
"hiv_rna_copies_ml": 50.0
}
]
}
Response
| Field | Type | Description |
|---|---|---|
formula |
string | vacs_2 |
formula_expression |
string | Tate 2019 Appendix Table 1 linear predictor and Table 2 score conversion |
score |
integer | VACS Index 2.0 score; 44 at the Appendix Table 2 median profile, scale 20 × (lp - lp_median) |
linear_predictor |
number | Unrounded Appendix Table 1 Cox linear predictor, 6 decimals |
age |
integer | Input age in years |
cd4_cells_mm3 |
integer | Input CD4 cells/mm³ |
hiv_rna_copies_ml |
number | Input HIV-1 RNA copies/mL |
hemoglobin_g_dl |
number | Input hemoglobin g/dL |
fib4 |
number | Caller-assigned FIB-4 |
egfr_ml_min_1_73m2 |
number | Caller-assigned eGFR mL/min/1.73m² |
hepatitis_c |
boolean | Caller-assigned hepatitis C flag |
albumin_g_dl |
number | Input albumin g/dL |
wbc_10e9_l |
number | Input WBC 10^9/L |
bmi_kg_m2 |
number | Input BMI kg/m² |
citation |
object | Tate et al. AIDS 2019 citation |
disclaimer |
string | Not-a-device notice |
Example JSON
Machine form of the same example. Frozen fixture. Not a live lookup.
{
"age": 40,
"disclaimer": "Not a medical device. Deterministic published-formula or published-code output for autonomous agents. A licensed clinician remains responsible for patient care and billing submissions.",
"citation": {
"authors": "Tate JP, Sterne JAC, Justice AC; Veterans Aging Cohort Study (VACS) and the Antiretroviral Therapy Cohort Collaboration (ART-CC)",
"doi": "10.1097/QAD.0000000000002140",
"id": "tate-2019-vacs-2",
"pmid": "30649088",
"source": "AIDS. 2019;33(5):903-912",
"title": "Albumin, white blood cell count, and body mass index improve discrimination of mortality in HIV-positive individuals"
},
"formula": "vacs_2",
"formula_expression": "lp = age_poly + cd4_poly + rna_poly + hb_poly + fib4_poly + egfr_spline + hcv + alb_poly + wbc_poly + bmi_poly; score = round(44 + 20*(lp - lp_median)); lp_median is Appendix Table 2 median profile (age 52, CD4 435, log10 HIV-1 RNA 1.7, Hb 14, FIB-4 1.34, eGFR 90, HCV no, albumin 4, WBC 5.5, BMI 25.3); age censored 30-75, X=(age-50)/5, PE 0.056/-0.004/0.005; CD4 censored 0-1000 as ln(max(1000-CD4, 1)), PE -0.056/-0.153/0.024; HIV-1 RNA log10 copies censored 1.3-5.0, centered (logVL-2), PE 0.513/-0.422/0.098; hemoglobin censored 9-16, centered (hemoglobin-14), PE -0.134/0.026/0.005; FIB-4 censored 0.5-7.5, PE 0.220/-0.009; eGFR censored 0-180, X1=eGFR/10, X2=max(eGFR-35,0)/10, X3=max(eGFR-65,0)/10, X4=max(eGFR-115,0)/10, PE -0.031/-0.077/0.106/0.133; HCV yes 0.342; albumin censored 2-5, centered (albumin-4), PE -0.443/0.104/0.028; WBC 10^9/L censored 2.5-11, centered (WBC-5.5), PE 0.126/0.020/-0.004; BMI censored 15-35, centered (BMI-25), PE -0.055/0.004; Tate 2019 Appendix Table 1 main analysis LVCF 180 days; caller-assigned FIB-4 and eGFR; not VACS 1.0; no published S0",
"score": 30,
"albumin_g_dl": 4.2,
"bmi_kg_m2": 26.0,
"wbc_10e9_l": 6.0,
"hemoglobin_g_dl": 15.0,
"linear_predictor": -1.428513,
"egfr_ml_min_1_73m2": 100.0,
"hepatitis_c": false,
"fib4": 1.0,
"cd4_cells_mm3": 600,
"hiv_rna_copies_ml": 50.0
}
Client errors (HTTP 400)
Invalid params return 400 without charge. Shared HTTP 402 and 503 meanings: Payments.
| HTTP | Code | When |
|---|---|---|
| 400 | invalid_vacs_2 |
VACS Index 2.0 inputs must match Tate 2019 age, CD4, HIV-1 RNA, hemoglobin, caller-assigned FIB-4 and eGFR, HCV, albumin, WBC, and BMI. Returned before settlement; you are not charged. |
| 400 | invalid_items |
POST body must be a JSON object with only an items array Returned before settlement; you are not charged. |
| 400 | invalid_item_count |
items must be an array of 1 to 25 objects Returned before settlement; you are not charged. |
| 400 | invalid_item |
each items entry must be a JSON object Returned before settlement; you are not charged. |
Related tools
- VACS 1.0 — Sum the Tate 2013 VACS Index 1.0 points after one year of antiretroviral therapy from age, CD4, HIV-1 RNA, hemoglobin, caller-assigned FIB-4 and eGFR, and hepatitis C.
- FIB-4 — Compute the FIB-4 fibrosis index from age, AST, ALT, and platelets.
Payment
Unpaid requests return HTTP 402 even if query parameters or POST items are missing or invalid, so CDP and agents can index the path. After a PAYMENT-SIGNATURE, invalid params return HTTP 400 JSON before settlement. magent does not charge. Fix the params, then request a new 402 quote for that complete URL. Catalog misses (empty matches, found=false) are valid paid 200s. Unpaid valid requests return HTTP 402 with a base64
PAYMENT-REQUIRED
header. HTTP 503 is not a new quote: retry the same PAYMENT-SIGNATURE. Full handshake
and shared payment errors: Payments.
Stdio MCP: /docs/mcp.
Guarantees
- HTTP 402 is unpaid, including a missing query. After PAYMENT-SIGNATURE, invalid parameters return HTTP 400 before settlement. You are not charged. HTTP 402 never includes the tool JSON.
- exact: settlement finishes before the tool (paymentFlow upfront). batch-settlement: verify/deposit before the tool; chargedCumulativeAmount commits after HTTP 2xx. Uncertain or failed settlement fails closed (HTTP 503). Retry the same PAYMENT-SIGNATURE.
- HTTP 402 is unpaid only. Do not sign a second authorization because of a 503.
- Execution is timeout-bounded and concurrency-capped.
- Calculator inputs are stored encrypted for allowlisted operators (Magent Console). They are not in public logs, SSH lookups, catalog, or rollups. Request logs store path without query.